Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015900273.1_cds_XP_016450348.1_44812
CDS Infomation

[gene=LOC107775163] [db_xref=GeneID:107775163] [protein=heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like] [protein_id=XP_016450348.1] [location=complement(join(10988..11644,13055..13396))] [gbkey=CDS]
Sequence

ATGGTGTTCTCTATGGTGATGAGTTTTTCACCTCATATCTGTCTTCCAAGGAGCCACATG
GTTATGCAGAAAACAATCCGGTGCTCGGCTTCTGTTTCGACAGCGTCTGAGTCCATCCAA
TTTGATCTTAAGAATTATTGGACAACTCTAATTCGTGATATCAACCAGAAGCTTGACGAG
GCAGTTCCTGTTAAGTACCCAAATCAGATTTATGAGGCCATGCGCTACTCCGTTCTGGCC
AAGGGTGCTAAAAGGTCCCCGCCCATCATGTGTGTCGCTGCTTGTGAGCTTTTCGGTGGA
AATCGTCTTGCTGCCTTTCCTACTGCCTGTGCCTTAGAGATGGTTCATGCTGCTTCATTG
ATTCATGATGATCTGCCTTGCATGGATGATGACCCAACTCGACGAGGGCTGCCTGCAAAC
CATACAGTTTTTGGTGTAGATATGGCAATTTTGGCTGGGGATGCTTTGTTCCCTCTTGGG
TTCCAGCATATTGTGTCTCACACTCCAAGTGATCTCGTTCCCGAGGATCGAGTCCTCAGG
GTCATTACAGAGATTGCTCGAGCTGTGGGGTCCACTGGCATGGCTGCCGGTCAATTCCTT
GACCTTGAGGGTGGACCAAATGCTGTTGACTCTGTCCAAGAAAAGAAATATGGTGAAATG
GGTGAGTGCTCTGCCGTTTGTGGAGGTCTCTTGGCTGGTGCTTCAGATGAGGAGATCCAA
CATCTGAGAAGATACGGTCGAGCAGTTGGTGTCTTATATCGAGTTGTTGACGATATATTG
GAAGCAAAAGAGACCCAGGACAAAAGTGAGGGGAAGAAAAAGAAAGGCAAAAGCTATGTT
AGTCTTTACGGCATTGAGAAGGCTATGGAAGTTGCTGAGGATCTTAGAGCACAGGCTAAG
AGAGAGTTAGATGGTTTGAAGAAGTATGGTGATAAAGTCATTCCACTTTACAGTTTTGTA
GATTATGCTGCAGATAGAGGTTTTAGCCTTGATAACTAA

Peptide Sequence

PEP ID

XP_016450348.1
PEP Infomation

PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like [Nicotiana tabacum]
Sequence

MVFSMVMSFSPHICLPRSHMVMQKTIRCSASVSTASESIQFDLKNYWTTLIRDINQKLDE
AVPVKYPNQIYEAMRYSVLAKGAKRSPPIMCVAACELFGGNRLAAFPTACALEMVHAASL
IHDDLPCMDDDPTRRGLPANHTVFGVDMAILAGDALFPLGFQHIVSHTPSDLVPEDRVLR
VITEIARAVGSTGMAAGQFLDLEGGPNAVDSVQEKKYGEMGECSAVCGGLLAGASDEEIQ
HLRRYGRAVGVLYRVVDDILEAKETQDKSEGKKKKGKSYVSLYGIEKAMEVAEDLRAQAK
RELDGLKKYGDKVIPLYSFVDYAADRGFSLDN

Transcript Sequence

Gene sequence data has not been registered.